libpappsomspp
Library for mass spectrometry
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filterceilingamplitudepercentage.h
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1/* BEGIN software license
2 *
3 * msXpertSuite - mass spectrometry software suite
4 * -----------------------------------------------
5 * Copyright(C) 2009,...,2021 Filippo Rusconi
6 *
7 * http://www.msxpertsuite.org
8 *
9 * This file is part of the msXpertSuite project.
10 *
11 * The msXpertSuite project is the successor of the massXpert project. This
12 * project now includes various independent modules:
13 *
14 * - massXpert, model polymer chemistries and simulate mass spectrometric data;
15 * - mineXpert, a powerful TIC chromatogram/mass spectrum viewer/miner;
16 *
17 * This program is free software: you can redistribute it and/or modify
18 * it under the terms of the GNU General Public License as published by
19 * the Free Software Foundation, either version 3 of the License, or
20 * (at your option) any later version.
21 *
22 * This program is distributed in the hope that it will be useful,
23 * but WITHOUT ANY WARRANTY; without even the implied warranty of
24 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
25 * GNU General Public License for more details.
26 *
27 * You should have received a copy of the GNU General Public License
28 * along with this program. If not, see <http://www.gnu.org/licenses/>.
29 *
30 * END software license
31 */
32
33
34#pragma once
35
36
37#include <QObject>
38
39#include "../../trace/trace.h"
40#include "../../exportinmportconfig.h"
41#include "filternameinterface.h"
42
43
44namespace pappso
45{
46
47
48class FilterCeilingAmplitudePercentage;
49
50typedef std::shared_ptr<FilterCeilingAmplitudePercentage>
52typedef std::shared_ptr<const FilterCeilingAmplitudePercentage>
54
55
56/**
57 * @brief Redefines the ceiling intensity of the Trace
58 *
59 * The amplitude of the trace is computed (maxValue - minValue)
60 * Its fraction is calculated = amplitude * (percentage / 100)
61 * The threshold value is computed as (minValue + fraction)
62 *
63 * When the values to be filtered are above that threshold they acquire that
64 * threshold value.
65 *
66 * When the values to be filtered are below that threshold they remain
67 * unchanged.
68 *
69 * This effectively re-ceilings the values to threshold.
70 */
72 : public FilterNameInterface
73{
74 public:
75 FilterCeilingAmplitudePercentage(double percentage);
76 FilterCeilingAmplitudePercentage(const QString &parameters);
79
81
83 operator=(const FilterCeilingAmplitudePercentage &other);
84
85 Trace &filter(Trace &data_points) const override;
86
87 double getPercentage() const;
88 QString name() const override;
89
90 QString toString() const override;
91
92 protected:
93 void buildFilterFromString(const QString &strBuildParams) override;
94
95 private:
97};
98} // namespace pappso
Redefines the ceiling intensity of the Trace.
Interface that allows to build filter objects from strings.
A simple container of DataPoint instances.
Definition trace.h:148
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< const FilterCeilingAmplitudePercentage > FilterCeilingAmplitudePercentageCstSPtr
std::shared_ptr< FilterCeilingAmplitudePercentage > FilterCeilingAmplitudePercentageSPtr